overlapToMatrix: overlapToMatrix

overlapToMatrixR Documentation

overlapToMatrix

Description

create a count matrix based on overlap results from calculateOverlapRaster, calculateOverlapSerial, or calculateOverlapParallel

Usage

overlapToMatrix(
  gobject,
  name = "raw",
  poly_info = "cell",
  feat_info = "rna",
  count_info_column = NULL,
  return_gobject = TRUE
)

Arguments

gobject

giotto object

name

name for the overlap count matrix

poly_info

polygon information

feat_info

feature information

count_info_column

column with count information

return_gobject

return giotto object (default: TRUE)

Value

giotto object or count matrix


drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.