overlapToMatrixMultiPoly: overlapToMatrixMultiPoly

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

overlapToMatrixMultiPoly

Description

create a count matrix based on overlap results from calculateOverlapRaster, calculateOverlapSerial, or calculateOverlapParallel and aggregate information from multiple polygon layers (e.g. z-stacks) together

Usage

overlapToMatrixMultiPoly(
  gobject,
  name = "raw",
  poly_info = "cell",
  feat_info = "rna",
  new_poly_info = "multi",
  return_gobject = TRUE
)

Arguments

gobject	giotto object
name	name for the overlap count matrix
poly_info	vector with polygon information
feat_info	feature information
new_poly_info	name for new aggregated polygon information
return_gobject	return giotto object (default: TRUE)

Value

giotto object or count matrix

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.