plotCombineInteractionChangedGenes: plotCombineInteractionChangedGenes

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

plotCombineInteractionChangedGenes

Description

Create visualization for combined (pairwise) ICF scores

Usage

plotCombineInteractionChangedGenes(...)

Arguments

...

Arguments passed on to plotCombineInteractionChangedFeats gobject giotto object combIcfObject ICFscores, output from combineInteractionChangedFeats() selected_interactions interactions to show selected_feat_to_feat pairwise feature combinations to show detail_plot show detailed info in both interacting cell types simple_plot show a simplified plot simple_plot_facet facet on interactions or feats with simple plot facet_scales ggplot facet scales paramter facet_ncol ggplot facet ncol parameter facet_nrow ggplot facet nrow parameter colors vector with two colors to use show_plot show plots return_plot return plotting object save_plot directly save the plot [boolean] save_param list of saving parameters from all_plots_save_function default_save_name default save name for saving, don't change, change save_name in save_param

See Also

plotCombineInteractionChangedFeats

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.