plotICF: Plot interaction changed features
In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

View source: R/spatial_interaction_visuals.R

plotICF

R Documentation

Plot interaction changed features

Description

Create barplot to visualize interaction changed features

Usage

plotICF(
  gobject,
  icfObject,
  source_type,
  source_markers,
  ICF_feats,
  cell_color_code = NULL,
  show_plot = NA,
  return_plot = NA,
  save_plot = NA,
  save_param = list(),
  default_save_name = "plotICF"
)

Arguments

`gobject`	giotto object
`icfObject`	ICF (interaction changed feature) score object
`source_type`	cell type of the source cell
`source_markers`	markers for the source cell type
`ICF_feats`	named character vector of ICF features
`cell_color_code`	cell color code for the interacting cell types
`show_plot`	show plots
`return_plot`	return plotting object
`save_plot`	directly save the plot [boolean]
`save_param`	list of saving parameters from `all_plots_save_function`
`default_save_name`	default save name for saving, don't change, change save_name in save_param