plot_cell_polygon_layer: Plot cell polygon layer

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

Plot cell polygon layer

Description

Low level function to plot a polygon

Usage

plot_cell_polygon_layer(
  ggobject = NULL,
  polygon_dt,
  polygon_grouping = "poly_ID",
  sdimx = "x",
  sdimy = "y",
  fill = NULL,
  poly_fill_gradient = c("blue", "white", "red"),
  fill_gradient_midpoint = NULL,
  fill_as_factor = TRUE,
  fill_code = NULL,
  bg_color = "black",
  color = "black",
  alpha = 0.5,
  size = 2
)

Details

This functions plots a polygon based on spatial cell information. This is most likely a polygon that corresponds to the cell shape.

Value

ggplot

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.