plot_feature_points_layer: plot_feature_points_layer

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

plot_feature_points_layer

Description

low level function to plot a points at the spatial in situ level

Usage

plot_feature_points_layer(
  ggobject,
  spatial_feat_info,
  feats,
  feats_color_code = NULL,
  feat_shape_code = NULL,
  sdimx = "x",
  sdimy = "y",
  color = "feat_ID",
  shape = "feat",
  point_size = 1.5,
  stroke = NULL,
  show_legend = TRUE,
  plot_method = c("ggplot", "scattermore", "scattermost"),
  expand_counts = FALSE,
  count_info_column = "count",
  jitter = c(0, 0),
  verbose = TRUE
)

Details

This function can plot multiple features over multiple modalities. These plots can get very big very fast.

Value

ggplot

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.