processGiotto: processGiotto

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

processGiotto

Description

Wrapper for the different Giotto object processing functions

Usage

processGiotto(
  gobject,
  filter_params = list(),
  norm_params = list(),
  stat_params = list(),
  adjust_params = list(),
  verbose = TRUE
)

Arguments

gobject	giotto object
filter_params	additional parameters to filterGiotto
norm_params	additional parameters to normalizeGiotto
stat_params	additional parameters to addStatistics
adjust_params	additional parameters to adjustGiottoMatrix; set to NULL if not required
verbose	be verbose (default is TRUE)

Details

See filterGiotto, normalizeGiotto, addStatistics, and adjustGiottoMatrix. For more information about the different parameters in each step. If you do not provide them it will use the default values. If no adjustment is required, adjust_params must be set to NULL

Value

giotto object

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.