readExprData: Read expression data

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

Read expression data

Description

Read a nested list of expression data inputs in order to generate a list of giotto-native exprObj

Usage

readExprData(
  data_list,
  sparse = TRUE,
  cores = determine_cores(),
  default_feat_type = NULL,
  verbose = TRUE,
  provenance = NULL
)

Arguments

sparse	(boolean, default = TRUE) read matrix data in a sparse manner
cores	number of cores to use
default_feat_type	default feature type to use
verbose	be verbose
provenance	provenance information
expr_list	(nested) list of expression input data

Details

mylistA = list('a' = matrix(1:5), 'b' = matrix(1:5)) depth(mylistA)

mylistB = list(A = list('a' = matrix(1:5), 'b' = matrix(1:5)), B = list('c' = matrix(1:5),'d' = matrix(1:5))) depth(mylistB)

mylistC = list('RNA' = list('RAW' = list('cell' = matrix(1:5), 'nucleus' = matrix(6:10)), 'NORM' = list('cell' = matrix(11:15),'nucleus' = matrix(20:25))), 'PROT' = list('RAW' = list('cell' = matrix(16:20)))) depth(mylistC)

mymatD = matrix(data = 1:4)

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.