readPolygonData: Read list of polygons information
In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

readPolygonData

R Documentation

Read list of polygons information

Description

Function extract list of polygons when given raw input as either mask or tabular data. Calls the respective createGiottoPolygons functions.
If a giottoPolygon object is passed then no edits will be made other than updating the name slot if the list is named.

Usage

readPolygonData(
  data_list,
  default_name = "cell",
  input = "guess",
  polygon_mask_list_params = NULL,
  polygon_dfr_list_params = NULL,
  calc_centroids = FALSE,
  verbose = TRUE
)

Arguments

`default_name`	default name to assign if `polygonlist` is not a list. If `polygonlist` is an unnamed list then `default_name` will be used as part of the template for generating indexed default names.
`input`	what type of input is being used. When set to 'guess', uses 'mask' if `polygonlist` is of type character and 'table' when `polygonlist` is dataframe-like
`polygon_mask_list_params`	parameters for when using 'mask' workflow
`polygon_dfr_list_params`	parameters for when using 'table' workflow
`calc_centroids`	whether centroids should be calculated during polygon creation
`verbose`	be verbose