registerGiottoObjectListRvision: registerGiottoObjectListRvision

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

registerGiottoObjectListRvision

Description

Function to spatially align gobject data based on Rvision image registration.

Usage

registerGiottoObjectListRvision(
  gobject_list = gobject_list,
  image_list = NULL,
  save_dir = NULL,
  spatloc_unreg = NULL,
  spatloc_reg_name = "raw",
  verbose = TRUE
)

Arguments

gobject_list	list of gobjects to register
image_list	Filepaths to unregistered images
save_dir	(Optional) If given, save registered images to this directory
spatloc_unreg	spatial locations to use
spatloc_reg_name	name for registered spatial locations to. Defaults to replacement of spat_unreg (optional)
verbose	be verbose

Value

list of registered giotto objects where the registered images and spatial locations

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.