rna_standard_normalization: RNA standard normalization

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

RNA standard normalization

Description

standard function for RNA normalization

Usage

rna_standard_normalization(
  gobject,
  raw_expr,
  feat_type,
  spat_unit,
  library_size_norm = TRUE,
  scalefactor = 6000,
  log_norm = TRUE,
  log_offset = 1,
  logbase = 2,
  scale_feats = TRUE,
  scale_cells = TRUE,
  scale_order = c("first_feats", "first_cells"),
  verbose = TRUE
)

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.