saveGiotto: saveGiotto

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

saveGiotto

Description

Saves a Giotto object to a specific folder structure

Usage

saveGiotto(
  gobject,
  foldername = "saveGiottoDir",
  dir = getwd(),
  method = c("RDS", "qs"),
  method_params = list(),
  overwrite = FALSE,
  image_filetype = "PNG",
  verbose = TRUE,
  ...
)

Arguments

gobject	Giotto object
foldername	Folder name
dir	Directory where to create the folder
method	method to save main object
method_params	additional method parameters for RDS or qs
overwrite	Overwrite existing folders
image_filetype	the image filetype to use, see writeRaster
verbose	be verbose
...	additional parameters for writeRaster

Details

Works together with loadGiotto to save and re-load Giotto objects. Additional method_params need to be provided as a list and will go to saveRDS or qsave

Value

Creates a directory with Giotto object information

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.