setExpression: Set expression data

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

Set expression data

Description

Function to set expression values for giotto object.

Usage

setExpression(
  gobject,
  x,
  spat_unit = NULL,
  feat_type = NULL,
  name = "raw",
  provenance = NULL,
  verbose = TRUE,
  initialize = TRUE
)

Arguments

gobject	giotto object
x	exprObj or list of exprObj to set. Passing NULL will remove a specified set of expression data from the giotto object
spat_unit	spatial unit (e.g. "cell")
feat_type	feature type (e.g. "rna", "dna", "protein")
name	name for the expression information
provenance	provenance information (optional) information for the giotto object. Pass NULL to remove an expression object
verbose	be verbose
initialize	(default = FALSE) whether to initialize the gobject before returning

Value

giotto object

See Also

Other expression accessor functions: getExpression(), set_expression_values()

Other functions to set data in giotto object: get_cell_id(), get_feat_id(), setCellMetadata(), setDimReduction(), setFeatureInfo(), setFeatureMetadata(), setGiottoImage(), setMultiomics(), setNearestNetwork(), setPolygonInfo(), setSpatialEnrichment(), setSpatialGrid(), setSpatialLocations(), setSpatialNetwork(), set_NearestNetwork(), set_cell_id(), set_cell_metadata(), set_dimReduction(), set_expression_values(), set_feat_id(), set_feature_info(), set_giottoImage(), set_multiomics(), set_polygon_info(), set_spatialGrid(), set_spatialNetwork(), set_spatial_enrichment(), set_spatial_locations()

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.