setMultiomics: Set multiomics integration results

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

Set multiomics integration results

Description

Set a multiomics integration result in a Giotto object

Usage

setMultiomics(
  gobject = NULL,
  result,
  spat_unit = NULL,
  feat_type = NULL,
  integration_method = "WNN",
  result_name = "theta_weighted_matrix",
  verbose = TRUE
)

Arguments

gobject	A Giotto object
result	A matrix or result from multiomics integration (e.g. theta weighted values from runWNN)
spat_unit	spatial unit (e.g. 'cell')
feat_type	(e.g. 'rna_protein')
integration_method	multiomics integration method used. Default = 'WNN'
result_name	Default = 'theta_weighted_matrix'
verbose	be verbose

Value

A giotto object

See Also

Other multiomics accessor functions: getMultiomics(), get_multiomics(), set_multiomics()

Other functions to set data in giotto object: get_cell_id(), get_feat_id(), setCellMetadata(), setDimReduction(), setExpression(), setFeatureInfo(), setFeatureMetadata(), setGiottoImage(), setNearestNetwork(), setPolygonInfo(), setSpatialEnrichment(), setSpatialGrid(), setSpatialLocations(), setSpatialNetwork(), set_NearestNetwork(), set_cell_id(), set_cell_metadata(), set_dimReduction(), set_expression_values(), set_feat_id(), set_feature_info(), set_giottoImage(), set_multiomics(), set_polygon_info(), set_spatialGrid(), set_spatialNetwork(), set_spatial_enrichment(), set_spatial_locations()

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.