set_expression_values: Set expression values

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

Set expression values

Description

Function to set expression values for giotto object

Usage

set_expression_values(
  gobject,
  values,
  spat_unit = NULL,
  feat_type = NULL,
  name = "test",
  provenance = NULL,
  verbose = TRUE,
  set_defaults = TRUE,
  initialize = FALSE
)

Arguments

gobject	giotto object
values	exprObj If NULL, then the object will be removed.
spat_unit	spatial unit (e.g. "cell")
feat_type	feature type (e.g. "rna", "dna", "protein")
name	name for the expression slot
provenance	provenance information (optional)
verbose	be verbose
set_defaults	set default spat_unit and feat_type. Change to FALSE only when expression and spat_info are not expected to exist.
initialize	(default = FALSE) whether to initialize the gobject before returning. Will be set to TRUE when called by the external

Value

giotto object

See Also

Other expression accessor functions: getExpression(), setExpression()

Other functions to set data in giotto object: get_cell_id(), get_feat_id(), setCellMetadata(), setDimReduction(), setExpression(), setFeatureInfo(), setFeatureMetadata(), setGiottoImage(), setMultiomics(), setNearestNetwork(), setPolygonInfo(), setSpatialEnrichment(), setSpatialGrid(), setSpatialLocations(), setSpatialNetwork(), set_NearestNetwork(), set_cell_id(), set_cell_metadata(), set_dimReduction(), set_feat_id(), set_feature_info(), set_giottoImage(), set_multiomics(), set_polygon_info(), set_spatialGrid(), set_spatialNetwork(), set_spatial_enrichment(), set_spatial_locations()

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.