set_giottoImage: Set giotto image object

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

Set giotto image object

Description

Directly attach a giotto image to giotto object

Usage

set_giottoImage(
  gobject = NULL,
  image = NULL,
  image_type = NULL,
  name = NULL,
  verbose = TRUE
)

Arguments

gobject	giotto object
image	giotto image object to be attached without modification to the giotto object
image_type	type of giotto image object. Either "image" or "largeImage"
name	name of giotto image object
verbose	be verbose

Details

Use with care! This function directly attaches giotto image objects to the gobject without further modifications of spatial positioning values within the image object that are generally needed in order for them to plot in the correct location relative to the other modalities of spatial data.
For the more general-purpose method of attaching image objects, see addGiottoImage

Value

giotto object

See Also

addGiottoImage

Other image data accessor functions: getGiottoImage(), get_giottoImage(), setGiottoImage()

Other functions to set data in giotto object: get_cell_id(), get_feat_id(), setCellMetadata(), setDimReduction(), setExpression(), setFeatureInfo(), setFeatureMetadata(), setGiottoImage(), setMultiomics(), setNearestNetwork(), setPolygonInfo(), setSpatialEnrichment(), setSpatialGrid(), setSpatialLocations(), setSpatialNetwork(), set_NearestNetwork(), set_cell_id(), set_cell_metadata(), set_dimReduction(), set_expression_values(), set_feat_id(), set_feature_info(), set_multiomics(), set_polygon_info(), set_spatialGrid(), set_spatialNetwork(), set_spatial_enrichment(), set_spatial_locations()

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.