showSpatialCorFeats: showSpatialCorFeats

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

showSpatialCorFeats

Description

Shows and filters spatially correlated features

Usage

showSpatialCorFeats(
  spatCorObject,
  use_clus_name = NULL,
  selected_clusters = NULL,
  feats = NULL,
  min_spat_cor = 0.5,
  min_expr_cor = NULL,
  min_cor_diff = NULL,
  min_rank_diff = NULL,
  show_top_feats = NULL
)

Arguments

spatCorObject	spatial correlation object
use_clus_name	cluster information to show
selected_clusters	subset of clusters to show
feats	subset of features to show
min_spat_cor	filter on minimum spatial correlation
min_expr_cor	filter on minimum single-cell expression correlation
min_cor_diff	filter on minimum correlation difference (spatial vs expression)
min_rank_diff	filter on minimum correlation rank difference (spatial vs expression)
show_top_feats	show top features per gene

Value

data.table with filtered information

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.