spatInSituPlotDensity_single: spatInSituPlotDensity_single

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

spatInSituPlotDensity_single

Description

low level function to plot density plots at the spatial in situ level

Usage

spatInSituPlotDensity_single(
  gobject,
  feat = NULL,
  feat_type = "rna",
  sdimx = "x",
  sdimy = "y",
  alpha = 0.95,
  show_polygon = TRUE,
  polygon_feat_type = "cell",
  polygon_color = "black",
  polygon_fill = NULL,
  polygon_fill_as_factor = NULL,
  polygon_alpha = 0.5,
  polygon_size = 0.5,
  coord_fix_ratio = NULL,
  axis_text = 8,
  axis_title = 8,
  legend_text = 6,
  background_color = "black"
)

Details

This function can plot one feature for one modality.

Value

ggplot

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.