spatialExperimentToGiotto | R Documentation |
Utility function to convert a SpatialExperiment object to a Giotto object
spatialExperimentToGiotto(
spe,
nn_network = NULL,
sp_network = NULL,
verbose = TRUE
)
spe |
Input SpatialExperiment object to convert to a Giotto object. |
nn_network |
Specify the name of the nearest neighbour network(s)
in the input SpatialExperiment object. Default |
sp_network |
Specify the name of the spatial network(s) in the input
SpatialExperiment object. Default |
verbose |
A boolean value specifying if progress messages should
be displayed or not. Default |
Giotto object
## Not run:
library(SpatialExperiment)
example(read10xVisium, echo = FALSE)
spatialExperimentToGiotto(spe)
## End(Not run)
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