spatialNetworkObj-class: S4 spatialNetworkObj Class

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

S4 spatialNetworkObj Class

Description

Framework to store spatial network information

Details

The generic access operators work with the data within the networkDT slot (filtered).

Slots

name

name of spatialNetworkObj

method

method used to generate spatial network

parameters

additional method-specific parameters used during spatial network generation

outputObj

network geometry object

networkDT

data.table of network connections, distances, and weightings

networkDT_before_filter

unfiltered data.table of network connections, distances, and weightings

cellShapeObj

network cell shape information

crossSectionObjects

crossSectionObjects (see create_crossSection_object)

spat_unit

spatial unit tag

provenance

origin of aggregated information (if applicable)

misc

misc

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.