subsetGiottoLocsSubcellular: Subset raw subcellular information by location

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

Subset raw subcellular information by location

Description

Subsets Giotto object based on spatial coordinates

Usage

subsetGiottoLocsSubcellular(
  gobject,
  poly_info,
  feat_type = NULL,
  x_min = NULL,
  x_max = NULL,
  y_min = NULL,
  y_max = NULL,
  z_max = NULL,
  z_min = NULL,
  verbose = TRUE
)

Arguments

gobject	giotto object
poly_info	polygon information to use
feat_type	feature type (e.g. "rna", "dna", "protein")
x_max, x_min, y_max, y_min, z_max, z_min	minimum and maximum x, y, and z coordinates to subset to
verbose	be verbose

Details

Subsets a Giotto Subcellular object - without aggregated information - based on spatial coordinates

Value

giotto object

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.