updateGiottoImage | R Documentation |
Updates the spatial positioning and sizing of a giotto image
or
largeImage
attached to a giotto object.
updateGiottoImage(
gobject = NULL,
image_name = NULL,
largeImage_name = NULL,
xmax_adj = 0,
xmin_adj = 0,
ymax_adj = 0,
ymin_adj = 0,
x_shift = 0,
y_shift = 0,
scale_factor = NULL,
scale_x = 1,
scale_y = 1,
order = c("first_adj", "first_scale"),
xmax_set = NULL,
xmin_set = NULL,
ymax_set = NULL,
ymin_set = NULL,
return_gobject = TRUE,
verbose = TRUE
)
gobject |
gobject containing desired image object |
image_name |
name of giotto |
largeImage_name |
name of giotto |
xmax_adj, xmin_adj, ymax_adj, ymin_adj |
adjust image boundaries by increasing maximum and decreasing minimum bounds respectively of xy bounds |
x_shift, y_shift |
shift entire image along xy axes |
scale_factor |
set |
scale_x, scale_y |
independently scale x or y axis image mapping from coordinate origin |
order |
order of operations between fine adjustments (adjustment and shift parameters) and scaling |
xmin_set, xmax_set, ymin_set, ymax_set |
directly set xy image boundaries. Overrides minmax values as spatial anchor. |
return_gobject |
return a giotto object if |
verbose |
be verbose |
This function works for all image objects associated with Giotto.
a giotto object or an updated giotto image object if return_gobject = F
Other basic image functions:
addGiottoImage()
,
plotGiottoImage()
,
reconnectGiottoImage()
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