updateGiottoImageMG | R Documentation |
Updates the boundaries of a giotto image
object attached to
a giotto
object if both gobject
and image_name
params
are given. Alternatively can directly accept and return as image
updateGiottoImageMG(
gobject = NULL,
image_name = NULL,
giottoImage = NULL,
xmax_adj = 0,
xmin_adj = 0,
ymax_adj = 0,
ymin_adj = 0,
x_shift = 0,
y_shift = 0,
scale_factor = NULL,
scale_x = 1,
scale_y = 1,
order = c("first_adj", "first_scale"),
xmin_set = NULL,
xmax_set = NULL,
ymin_set = NULL,
ymax_set = NULL,
return_gobject = TRUE,
verbose = TRUE
)
gobject |
|
image_name |
name of giotto |
giottoImage |
|
xmax_adj, xmin_adj, ymax_adj, ymin_adj |
adjust image boundaries by increasing maximum and decreasing minimum bounds respectively of xy bounds |
x_shift, y_shift |
shift entire image along xy axes |
scale_factor |
set |
scale_x, scale_y |
independently scale x or y axis image mapping from coordinate origin |
order |
order of operations between fine adjustments (adjustment and shift parameters) and scaling |
xmin_set |
set image xmin boundary. Applied before adjustments |
xmax_set |
set image xmax boundary. Applied before adjustments |
ymin_set |
set image ymin boundary. Applied before adjustments |
ymax_set |
set image ymax boundary. Applied before adjustments |
return_gobject |
return a |
verbose |
be verbose |
a giotto
object or an updated giotto image
object if
return_gobject = FALSe
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