writeGiottoLargeImage: writeGiottoLargeImage

In drieslab/Giotto_site_suite: Spatial Single-Cell Transcriptomics Toolbox

writeGiottoLargeImage

Description

Write full resolution image to file. Filetype extension should be included in filename argument. Be careful if write time and disk space needed if image is very large.

Usage

writeGiottoLargeImage(
  giottoLargeImage = NULL,
  gobject = NULL,
  largeImage_name = NULL,
  filename = NULL,
  dataType = NULL,
  max_intensity = NULL,
  overwrite = FALSE,
  verbose = TRUE
)

Arguments

giottoLargeImage	giottoLargeImage object
gobject	giotto object
largeImage_name	name of giottoLargeImage
filename	file name and path to write the image to
dataType	(optional) values for dataType are "INT1U", "INT2U", "INT2S", "INT4U", "INT4S", "FLT4S", "FLT8S". The first three letters indicate whether the dataType is integer (whole numbers) of a real number (decimal numbers), the fourth character indicates the number of bytes used (allowing for large numbers and/or more precision), and the "S" or "U" indicate whether the values are signed (both negative and positive) or unsigned (positive values only).
max_intensity	(optional) image max intensity value from which dataType can be automatically determined
overwrite	Overwrite if filename is already existing
verbose	be verbose

drieslab/Giotto_site_suite documentation built on April 26, 2023, 11:51 p.m.