Files in famuvie/breedR

Statistical Methods for Forest Genetic Resources Analysts

.Rbuildignore

.Rinstignore

.travis.yml

BinaryFiles

DESCRIPTION

LICENSE

NAMESPACE

NEWS

R/AllGeneric.R R/all.equal.R R/ar.R R/binaries.R R/blocks.R R/breedREnv.R R/breedr_effect.R R/checks.R R/competition.R R/coordinates.R R/cygwin.R R/data.R R/development.R R/diagonal.R R/effect_type.R R/fixed.R R/generic.R R/genetic.R R/get_efnames.R R/get_param.R R/get_pedigree.R R/get_structure.R R/gghacks.R R/help.R R/metagene-class.R R/model.matrix.R R/neighbours.at.R R/options.R R/os.R R/pedigree.R R/progsf90.R R/random.R R/remlf90-class.R R/remote.R R/renderpf90.R R/simulation.R R/spatial.R R/splines.R R/utils.R R/variogram.R R/vcov.R R/vgram_matrix.R README.md

appveyor.yml

data/douglas.rda

data/globulus.rda

data/larix.rda

data/m1.rda

data/m4.rda

demo/00Index

demo/Metagene-spatial.R demo/Plotting.R demo/Spatial-Autoregressive.R demo/generic.R demo/globulus.R

inst/.gitignore

inst/doc/Additive-Genetic-Models-in-Mixed-Populations.R inst/doc/Additive-Genetic-Models-in-Mixed-Populations.Rmd inst/doc/Additive-Genetic-Models-in-Mixed-Populations.pdf inst/doc/General-and-Specific-Combining-Abilities.R inst/doc/General-and-Specific-Combining-Abilities.Rmd inst/doc/General-and-Specific-Combining-Abilities.pdf inst/doc/Handling-pedigrees.R inst/doc/Handling-pedigrees.Rmd inst/doc/Handling-pedigrees.pdf inst/doc/Heritability.pdf inst/doc/Heterogeneous-variances.pdf inst/doc/Missing-values.pdf inst/doc/Overview.R inst/doc/Overview.Rmd inst/doc/Overview.pdf

inst/testdata/airemlf90_log_1.txt

inst/testdata/airemlf90_log_2.txt

inst/testdata/airemlf90_log_3.txt

inst/testdata/airemlf90_log_4.txt

inst/testdata/index.json

inst/testdata/remlf90_log_1.txt

inst/testdata/res_ar.rds

inst/testdata/res_blk.rds

inst/testdata/res_fixonly.rds

inst/testdata/res_mt.rds

inst/testdata/res_mtcp.rds

inst/testdata/res_ped_ar.rds

inst/testdata/res_spl.rds

man/Extract.metagene.Rd man/additive_genetic.Rd man/additive_genetic_animal.Rd man/additive_genetic_competition.Rd man/as.triplet.Rd man/b.values.Rd man/bispline_incidence.Rd man/breedR-package.Rd man/breedR.get.HOME.Rd man/breedR.get.USER.Rd man/breedR.option.Rd man/breedR.os.32or64bit.Rd man/breedR.os.Rd man/breedR.os.type.Rd man/breedR.remote.Rd man/breedr_ar.Rd man/breedr_blocks.Rd man/breedr_effect.Rd man/breedr_progsf90_repo.Rd man/breedr_splines.Rd man/build_grid.Rd man/build_pedigree.Rd man/check_pedigree.Rd man/check_progsf90.Rd man/check_var.ini.Rd man/compare.plots.Rd man/competition.Rd man/coordinates_breedR.Rd man/default_initial_variance.Rd man/determine.n.knots.Rd man/diagonal.Rd man/distribute_knots_uniformgrid.Rd man/douglas.Rd man/effect_group.Rd man/effect_type.Rd man/extract_block.Rd man/fill_holes.Rd man/fixed.Rd man/fixef.Rd man/generic.Rd man/genetic.Rd man/get_efnames.Rd man/get_ntraits.Rd man/get_param.Rd man/get_pedigree.Rd man/get_structure.Rd man/globulus.Rd man/install_progsf90.Rd man/is_numericlog.Rd man/larix.Rd man/loc_grid.Rd man/m1.Rd man/m4.Rd man/neighbours.at.Rd man/ngenerations.Rd man/nindividuals.Rd man/normalise_coordinates.Rd man/parse.txtmat.Rd man/permanent_environmental_competition.Rd man/pf90_code_missing.Rd man/pf90_default_heritability.Rd man/plot.remlf90.Rd man/progsf90.Rd man/random.Rd man/ranef.Rd man/read.metagene.Rd man/remlf90.Rd man/remote.Rd man/renderpf90.Rd man/renderpf90.matrix.Rd man/retrieve_remote.Rd man/sim.spatial.Rd man/simulation.Rd man/spatial.Rd man/spatial.plot.Rd man/splat.Rd man/validate_variance.Rd man/variogram.Rd man/vcov.remlf90.Rd man/vgram.matrix.Rd

src/Makefile

src/install.libs.R tests/integration/helper-testdata.R tests/integration/test-AR.R tests/integration/test-animal.R tests/integration/test-binaries.R tests/integration/test-blocks.R tests/integration/test-generic.R tests/integration/test-interactions.R tests/integration/test-lmm.R tests/integration/test-pedigree.R tests/integration/test-pf90_options.R tests/integration/test-reml-competition.R tests/integration/test-reml-interface.R tests/integration/test-reml-prediction.R tests/integration/test-splines.R tests/test-all.R tests/testthat/helper-testdata.R tests/testthat/test-AR.R tests/testthat/test-animal.R tests/testthat/test-blocks.R tests/testthat/test-checks.R tests/testthat/test-competition.R tests/testthat/test-effect_group.R tests/testthat/test-generic.R tests/testthat/test-get_structure.R tests/testthat/test-heritability.R tests/testthat/test-modelframe.R tests/testthat/test-modelmatrix.R tests/testthat/test-multitrait.R tests/testthat/test-parse_results.R tests/testthat/test-pedigree.R tests/testthat/test-renderpf90.R tests/testthat/test-simulation.R tests/testthat/test-spatial-varcomp.R tests/testthat/test-spatial.R tests/testthat/test-splines.R tests/testthat/test-utils.R tests/testthat/test-variogram.R tests/testthat/test-weights.R

vignettes/.gitignore

vignettes/Additive-Genetic-Models-in-Mixed-Populations.Rmd vignettes/General-and-Specific-Combining-Abilities.Rmd vignettes/Handling-pedigrees.Rmd vignettes/Heritability.Rmd vignettes/Heterogeneous-variances.Rmd vignettes/Missing-values.Rmd vignettes/Overview.Rmd

vignettes/img/breedR_functionality.png

vignettes/img/breedR_functionality.svg

vignettes/img/breedR_functionality_crop.png

vignettes/img/competition_model.png

vignettes/img/competition_model.svg

vignettes/img/gpl-v3-logo.png

vignettes/img/gpl-v3-logo.svg

vignettes/img/pedigree-background.png

vignettes/img/spatial-background.png

famuvie/breedR documentation built on Sept. 6, 2021, 4:50 a.m.