Files in gerbeldo/tidycell
CellID Data Analysis Inside the Tidyverse
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/cellid_wrapper.R
R/cimage.R
R/definitions.R
R/definitions_hex.R
R/definitions_magick.R
R/definitions_shinycell_utils.R
R/get_cell_mask_data.R
R/hu_moments_short.R
R/hw.R
R/imports.R
R/k-means_clustering.R
R/load_cell_data.R
R/magick_helpers.R
R/magrittr_compatibility.R
R/plotSubsetApp.R
R/plotSubsetApp_server.R
R/plotSubsetApp_ui.R
R/qc_filter.R
R/rcell2.R
R/read_tiff_tags.R
R/shinyAppServer.R
R/shinyAppUI.R
R/shinyCell.R
R/spline.poly.R
R/tagCell.R
R/tagCell_server.R
R/tagCell_ui.R
R/workflow_template.R
README.md
data/README.md
data/dark.TIFF
data/datos.con.todo.RDS
data/image_samples/BF_Position001.tif
data/image_samples/BF_Position002.tif
data/image_samples/BF_Position003.tif
data/image_samples/TFP_Position001.tif
data/image_samples/TFP_Position002.tif
data/image_samples/TFP_Position003.tif
data/image_samples/YFP_Position001.tif
data/image_samples/YFP_Position002.tif
data/image_samples/YFP_Position003.tif
data/image_samples/cleanup.sh
data/image_samples/parameters.txt
data/image_samples/pdata.csv
data/image_samples_classification/README.md
data/image_samples_classification/datos.RDS
data/test.TIFF
data/time_series_image_samples/BF_Position001_time01.tif
data/time_series_image_samples/BF_Position001_time02.tif
data/time_series_image_samples/BF_Position002_time01.tif
data/time_series_image_samples/BF_Position002_time02.tif
data/time_series_image_samples/TFP_Position001_time01.tif
data/time_series_image_samples/TFP_Position001_time02.tif
data/time_series_image_samples/TFP_Position002_time01.tif
data/time_series_image_samples/TFP_Position002_time02.tif
data/time_series_image_samples/YFP_Position001_time01.tif
data/time_series_image_samples/YFP_Position001_time02.tif
data/time_series_image_samples/YFP_Position002_time01.tif
data/time_series_image_samples/YFP_Position002_time02.tif
data/time_series_image_samples/pdata.csv
doc/TFP.out.png
doc/TFP.png
doc/preview_tile.png
doc/preview_trace.png
inst/cellid_arguments.txt
inst/parameters.txt
inst/parameters_test.txt
inst/workflow_template.Rmd
man/all.unique.Rd
man/annotation_magick.Rd
man/append_hues.Rd
man/append_hues2.Rd
man/applyFilter.Rd
man/arguments.Rd
man/bind_filters.Rd
man/calculate_extra_morpho_vars.Rd
man/cargar.out_all.Rd
man/cell.load.alt.Rd
man/cell.load.boundaries.Rd
man/cell2.Rd
man/cellArgs2.Rd
man/cellArgs2.summary.Rd
man/cellGif.Rd
man/cellMagick.Rd
man/cellSpread.Rd
man/cellSpreadPlot.Rd
man/cellStrip.Rd
man/cellStrips.Rd
man/cellid.Rd
man/check_tiff_mask.Rd
man/check_tiff_mask2.Rd
man/cimage.Rd
man/cimage.cell.data.Rd
man/cimage.cell.image.Rd
man/cluster_test.Rd
man/d.Rd
man/dot-format.sequence.Rd
man/dot-mk_flag_table.Rd
man/dot-parse_load_vars.Rd
man/getCellGeom.Rd
man/getFacetVars.Rd
man/getPositions.Rd
man/get_cell_image.Rd
man/get_cell_image.cell.data.Rd
man/get_cell_image.data.frame.Rd
man/get_fit_vars.Rd
man/get_workflow_template.Rd
man/helloWorld.Rd
man/hexPlotDf.Rd
man/hover_closest.Rd
man/hu.moments.Rd
man/hues_from_tsv2.Rd
man/hues_from_tsv_files2.Rd
man/hues_from_xy.Rd
man/hues_from_xy2.Rd
man/is.cell.data.Rd
man/kmeans_clustering.Rd
man/load_cell_data.Rd
man/magickCell.Rd
man/magickForKnitr.Rd
man/magickPaths.Rd
man/myhexbin.Rd
man/numbers_to_intervals.Rd
man/parameters.default.Rd
man/parameters.write.Rd
man/pic_df_from_tiff.Rd
man/pip.Rd
man/pipe.Rd
man/plotApp.Rd
man/plotAppServer.Rd
man/plotAppUI.Rd
man/plot_bound_filters.Rd
man/plot_filters.Rd
man/polyFilterApply.Rd
man/polyFilterCell.Rd
man/qc_execute.Rd
man/qc_filter.Rd
man/qc_reset.Rd
man/qc_undo.Rd
man/rangeExpand.Rd
man/rcell2.Rd
man/read_coords_tsv.Rd
man/read_tiff_masks.Rd
man/read_tiff_tags.Rd
man/read_tsv.con.pos.Rd
man/shinyAppServer.Rd
man/shinyAppUI.Rd
man/shinyCell.Rd
man/smooth.spline.poly.Rd
man/spline.poly.Rd
man/square.Rd
man/square_tile.Rd
man/standardise_data.Rd
man/standardize_data.Rd
man/tagCell.Rd
man/tagCellServer.Rd
man/tagCellUi.Rd
man/tsv_paths_from_args.Rd
man/updateList.Rd
man/write.delim.Rd
rcell2.Rproj
