base_algorithm: Souce code for the BASE algorithm. This code is adapted from...
In grst/immunedeconv: Methods for immune cell deconvolution
base_algorithm R Documentation
Souce code for the BASE algorithm.
This code is adapted from Varn et al., DOI: 10.1158/0008-5472.CAN-16-2490
Description
Souce code for the BASE algorithm.
This code is adapted from Varn et al., DOI: 10.1158/0008-5472.CAN-16-2490
Usage
base_algorithm(data, reg, perm = 100, median.norm = T)
Arguments
data
numeric matrix; Patient gene expression data, with genes as rows and patients as columns
reg
numeric matrix; Reference immune cell weights created using SuppSoftware1
perm
numeric; Number of permutations to perform during the normalization step
median.norm
logical; parameter stating whether to median center the expression values for each gene
grst/immunedeconv documentation built on Nov. 10, 2023, 1:33 a.m.
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| base_algorithm | R Documentation |
Souce code for the BASE algorithm. This code is adapted from Varn et al., DOI: 10.1158/0008-5472.CAN-16-2490
Description
Souce code for the BASE algorithm. This code is adapted from Varn et al., DOI: 10.1158/0008-5472.CAN-16-2490
Usage
base_algorithm(data, reg, perm = 100, median.norm = T)
Arguments
data |
numeric matrix; Patient gene expression data, with genes as rows and patients as columns |
reg |
numeric matrix; Reference immune cell weights created using SuppSoftware1 |
perm |
numeric; Number of permutations to perform during the normalization step |
median.norm |
logical; parameter stating whether to median center the expression values for each gene |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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