deconvolute_abis: Deconvolute using ABIS.
In grst/immunedeconv: Methods for immune cell deconvolution
deconvolute_abis R Documentation
Deconvolute using ABIS.
Description
Deconvolute using ABIS.
Usage
deconvolute_abis(gene_expression_matrix, arrays = FALSE, ...)
Arguments
gene_expression_matrix
a m x n matrix with m genes and n samples. Data
must be TPM-normalized, since the matrix accounts for mRNA bias
arrays
Set to TRUE if working with Microarray data instead of RNA-seq.
A different signature matrix will be used.
...
additional arguments
grst/immunedeconv documentation built on Nov. 10, 2023, 1:33 a.m.
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| deconvolute_abis | R Documentation |
Deconvolute using ABIS.
Description
Deconvolute using ABIS.
Usage
deconvolute_abis(gene_expression_matrix, arrays = FALSE, ...)
Arguments
gene_expression_matrix |
a m x n matrix with m genes and n samples. Data must be TPM-normalized, since the matrix accounts for mRNA bias |
arrays |
Set to TRUE if working with Microarray data instead of RNA-seq. A different signature matrix will be used. |
... |
additional arguments |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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