dataset_petitprez: Example RNA-seq dataset from the mMCP_Counter publication.
In grst/immunedeconv: Methods for immune cell deconvolution
dataset_petitprez R Documentation
Example RNA-seq dataset from the mMCP_Counter publication.
Description
A dataset of six RNA-seq samples from mouse blood and spleen, and associated
'gold standard' immune cell estimates profiled with fluorescence activated cell sorting (FACS)
Usage
dataset_petitprez
Format
an environment with two objects:
(1) expr_mat: gene expression matrix with gene_symbols as rownames and sample identifiers as colum names.
Counts are TPM-normalized
(2) ref: FACS measurements in a data.frame
Source
Petitprez et al. (2020), https://doi.org/10.1186/s13073-020-00783-w
grst/immunedeconv documentation built on Nov. 10, 2023, 1:33 a.m.
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| dataset_petitprez | R Documentation |
Example RNA-seq dataset from the mMCP_Counter publication.
Description
A dataset of six RNA-seq samples from mouse blood and spleen, and associated 'gold standard' immune cell estimates profiled with fluorescence activated cell sorting (FACS)
Usage
dataset_petitprez
Format
an environment with two objects:
(1) expr_mat: gene expression matrix with gene_symbols as rownames and sample identifiers as colum names.
Counts are TPM-normalized
(2) ref: FACS measurements in a data.frame
Source
Petitprez et al. (2020), https://doi.org/10.1186/s13073-020-00783-w
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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