deconvolute_quantiseq: Deconvolute using quanTIseq

In grst/immunedeconv: Methods for immune cell deconvolution

Deconvolute using quanTIseq

Description

Deconvolute using quanTIseq

Usage

deconvolute_quantiseq(gene_expression_matrix, tumor, arrays, scale_mrna, ...)

Arguments

gene_expression_matrix	a m x n matrix with m genes and n samples
tumor	Set to TRUE if dealing with tumor samples. if TRUE, signature genes with high expression in tumor samples are removed.
arrays	Set to TRUE if working with Microarray data instead of RNA-seq
scale_mrna	Set to FALSE to disable correction for cell type-specific differences in mRNA content
...	passed through to original quantiseq method. A native argument takes precedence over an immunedeconv argument (e.g. mRNAscale takes precedence over scale_mrna) See deconvolute_quantiseq.default().

grst/immunedeconv documentation built on Nov. 10, 2023, 1:33 a.m.