map_cell_types: Use a tree-hierarchy to map cell types among different...

In grst/immunedeconv: Methods for immune cell deconvolution

Use a tree-hierarchy to map cell types among different methods.

Description

cell_type refers to a cell type from the controlled vocabulary (CV). method_cell_type refers to a cell type from a method or dataset.

Usage

map_cell_types(use_cell_types, fractions, method_dataset = NULL)

Arguments

use_cell_types	list of cell types from the CV to map to
fractions	Dataframe with cell types as rows and samples as columns. Rownames corresponds to the method_cell_types. A named vector will be coerced into a one-column dataframe.
method_dataset	method or dataset with which fractions was generated. If NULL, the input data already uses the CV.

Value

numeric vector with CV cell types as names

grst/immunedeconv documentation built on Nov. 10, 2023, 1:33 a.m.