deconvolute_estimate: Source code for the ESTIMATE algorithm: Estimate of Stromal...
In grst/immunedeconv: Methods for immune cell deconvolution
deconvolute_estimate R Documentation
Source code for the ESTIMATE algorithm:
Estimate of Stromal and Immune Cells in Malignant Tumor Tissues from Expression Data
(https://doi.org/10.1038/ncomms3612)
Source: http://r-forge.r-project.org/projects/estimate/
Copyright: 2013-2022, MD Anderson Cancer Center (MDACC)
License: GPL-2
Description
Source code adapted from: http://download.r-forge.r-project.org/bin/windows/contrib/3.3/estimate_1.0.13.zip
Usage
deconvolute_estimate(gene_expression_matrix)
Arguments
gene_expression_matrix
a m x n matrix with m genes and n samples
Details
ESTIMATE algortihm: This function computes stromal, immune, and ESTIMATE scores
per sample using gene expression data, through GSEA. The ESTIMATE score is used
to compute an estimate of the tumor purity
Warning: The tumor purity estimation was originally intended only for microarray
affymetrix data
grst/immunedeconv documentation built on Nov. 10, 2023, 1:33 a.m.
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| deconvolute_estimate | R Documentation |
Source code for the ESTIMATE algorithm: Estimate of Stromal and Immune Cells in Malignant Tumor Tissues from Expression Data (https://doi.org/10.1038/ncomms3612) Source: http://r-forge.r-project.org/projects/estimate/ Copyright: 2013-2022, MD Anderson Cancer Center (MDACC) License: GPL-2
Description
Source code adapted from: http://download.r-forge.r-project.org/bin/windows/contrib/3.3/estimate_1.0.13.zip
Usage
deconvolute_estimate(gene_expression_matrix)
Arguments
gene_expression_matrix |
a m x n matrix with m genes and n samples |
Details
ESTIMATE algortihm: This function computes stromal, immune, and ESTIMATE scores per sample using gene expression data, through GSEA. The ESTIMATE score is used to compute an estimate of the tumor purity Warning: The tumor purity estimation was originally intended only for microarray affymetrix data
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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