API for grst/immunedeconv
Methods for immune cell deconvolution
| Global functions | |
|---|---|
| .get_all_children | Man page Source code |
| .get_available_datasets | Source code |
| .get_cell_type_list | Source code |
| .get_cell_type_map | Source code |
| .get_cell_type_tree | Source code |
| .get_node_by_name | Source code |
| .onLoad | Source code |
| ConvertRownameToLoci | Source code |
| DrawQQPlot | Source code |
| GetFractions.Abbas | Man page Source code |
| GetOutlierGenes | Source code |
| LoadImmuneGeneExpression | Source code |
| ParseInputExpression | Source code |
| RemoveBatchEffect | Source code |
| TimerINFO | Source code |
| annotate_cell_type | Man page |
| available_datasets | Man page |
| base_algorithm | Man page Source code |
| cell_type_list | Man page |
| cell_type_map | Man page |
| cell_type_mapping | Man page |
| cell_type_tree | Man page |
| check_cancer_types | Man page Source code |
| convert_human_mouse_genes | Man page |
| create_base_compendium | Man page Source code |
| custom_deconvolution | Man page |
| custom_deconvolution_methods | Man page |
| dataset_petitprez | Man page |
| dataset_racle | Man page |
| deconvolute | Man page |
| deconvolute_abis | Man page |
| deconvolute_abis_default | Man page Source code |
| deconvolute_base_algorithm | Man page |
| deconvolute_base_custom | Man page |
| deconvolute_cibersort | Man page |
| deconvolute_cibersort_custom | Man page Source code |
| deconvolute_consensus_tme | Man page |
| deconvolute_consensus_tme_custom | Man page |
| deconvolute_dcq | Man page |
| deconvolute_epic | Man page Source code |
| deconvolute_epic_custom | Man page |
| deconvolute_estimate | Man page Source code |
| deconvolute_mcp_counter | Man page Source code |
| deconvolute_mmcp_counter | Man page Source code |
| deconvolute_mouse | Man page |
| deconvolute_quantiseq | Man page |
| deconvolute_seqimmucc | Man page Source code |
| deconvolute_timer | Man page Source code |
| deconvolute_timer.default | Source code |
| deconvolute_xcell | Man page Source code |
| deconvolution_methods | Man page |
| deconvolution_methods_mouse | Man page |
| eset_to_matrix | Man page |
| find_children | Man page Source code |
| fix_namespace | Man page |
| get_all_children | Man page Source code |
| get_dcq_cell_types_list | Man page |
| get_immune_curated_data_path | Source code |
| immunedeconv | Man page |
| make_bulk_eset | Man page Source code |
| make_random_bulk | Man page Source code |
| map_cell_types | Man page Source code |
| map_result_to_celltypes | Man page Source code |
| mouse_cell_type_mapping | Man page |
| mouse_deconvolution | Man page |
| node_by_name | Man page |
| reduce_mouse_cell_types | Man page Source code |
| scale_to_million | Man page Source code |
| seqImmuCC_LLSR | Man page Source code |
| set_cibersort_binary | Man page Source code |
| set_cibersort_mat | Man page Source code |
| single_cell_simulation | Man page |
| summarise_children | Man page Source code |
| timer | Man page |
| timer_available_cancers | Man page |
| xCell.data | Man page |
