deconvolute_mcp_counter: Deconvolute using MCP-counter
In grst/immunedeconv: Methods for immune cell deconvolution
View source: R/immune_deconvolution_methods.R
deconvolute_mcp_counter R Documentation
Deconvolute using MCP-counter
Description
Deconvolute using MCP-counter
Usage
deconvolute_mcp_counter(
gene_expression_matrix,
feature_types = "HUGO_symbols",
...
)
Arguments
gene_expression_matrix
a m x n matrix with m genes and n samples
feature_types
type of identifiers used for expression features. May be
one of "affy133P2_probesets","HUGO_symbols","ENTREZ_ID"
...
passed through to original MCP-counter function. A native argument takes precedence
over an immunedeconv argument (e.g. featureType takes precedence over feature_types)
See MCPcounter.estimate.
grst/immunedeconv documentation built on Nov. 10, 2023, 1:33 a.m.
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View source: R/immune_deconvolution_methods.R
| deconvolute_mcp_counter | R Documentation |
Deconvolute using MCP-counter
Description
Deconvolute using MCP-counter
Usage
deconvolute_mcp_counter(
gene_expression_matrix,
feature_types = "HUGO_symbols",
...
)
Arguments
gene_expression_matrix |
a m x n matrix with m genes and n samples |
feature_types |
type of identifiers used for expression features. May be
one of |
... |
passed through to original MCP-counter function. A native argument takes precedence
over an immunedeconv argument (e.g. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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