deconvolute_epic: Deconvolute using EPIC

In grst/immunedeconv: Methods for immune cell deconvolution

Deconvolute using EPIC

Description

Deconvolute using EPIC

Usage

deconvolute_epic(gene_expression_matrix, tumor, scale_mrna, ...)

Arguments

gene_expression_matrix	a m x n matrix with m genes and n samples
tumor	Set to TRUE if working with tumor data. Will choose the TRef signature matrix in that case, BRef otherwise (through EPIC's reference parameter)
scale_mrna	Set to FALSE to disable correction for cell type-specific differences in mRNA content (through EPIC's mRNA_cell parameter)
...	passed through to EPIC. A native argument takes precedence over an immunedeconv argument (e.g. ref takes precedence over tumor) See EPIC

grst/immunedeconv documentation built on Nov. 10, 2023, 1:33 a.m.