Files in grst/immunedeconv
Methods for immune cell deconvolution

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE.md
Makefile
NAMESPACE
R/cell_type_mapping.R R/config.R R/datasets.R R/immune_deconvolution_methods.R R/quantiseq.R R/quantiseq_helper.R R/single_cell_simulation.R R/timer.R README.md
_pkgdown.yml
data/example_gene_expression_matrix.rda
inst/extdata/cell_type_mapping.xlsx
inst/extdata/fantom5_expression_set.rda
inst/extdata/quantiseq/HGNC_genenames_20170418.txt
inst/extdata/quantiseq/TIL10_TCGA_aberrant_immune_genes.txt
inst/extdata/quantiseq/TIL10_mRNA_scaling.txt
inst/extdata/quantiseq/TIL10_rmgenes.txt
inst/extdata/quantiseq/TIL10_signature.txt
inst/extdata/timer/immune_datasets/HPCTimmune.Rdata
inst/extdata/timer/immune_datasets/IRIS-marker-gene.txt
inst/extdata/timer/precalculated/genes_acc.RData
inst/extdata/timer/precalculated/genes_blca.RData
inst/extdata/timer/precalculated/genes_brca.RData
inst/extdata/timer/precalculated/genes_cesc.RData
inst/extdata/timer/precalculated/genes_chol.RData
inst/extdata/timer/precalculated/genes_coad.RData
inst/extdata/timer/precalculated/genes_dlbc.RData
inst/extdata/timer/precalculated/genes_esca.RData
inst/extdata/timer/precalculated/genes_gbm.RData
inst/extdata/timer/precalculated/genes_hnsc.RData
inst/extdata/timer/precalculated/genes_kich.RData
inst/extdata/timer/precalculated/genes_kirc.RData
inst/extdata/timer/precalculated/genes_kirp.RData
inst/extdata/timer/precalculated/genes_lgg.RData
inst/extdata/timer/precalculated/genes_lihc.RData
inst/extdata/timer/precalculated/genes_luad.RData
inst/extdata/timer/precalculated/genes_lusc.RData
inst/extdata/timer/precalculated/genes_meso.RData
inst/extdata/timer/precalculated/genes_ov.RData
inst/extdata/timer/precalculated/genes_paad.RData
inst/extdata/timer/precalculated/genes_pcpg.RData
inst/extdata/timer/precalculated/genes_prad.RData
inst/extdata/timer/precalculated/genes_read.RData
inst/extdata/timer/precalculated/genes_sarc.RData
inst/extdata/timer/precalculated/genes_skcm.RData
inst/extdata/timer/precalculated/genes_stad.RData
inst/extdata/timer/precalculated/genes_tgct.RData
inst/extdata/timer/precalculated/genes_thca.RData
inst/extdata/timer/precalculated/genes_thym.RData
inst/extdata/timer/precalculated/genes_ucec.RData
inst/extdata/timer/precalculated/genes_ucs.RData
inst/extdata/timer/precalculated/genes_uvm.RData
inst/extdata/timer/precalculated/immune.expression.curated.RData
man/GetFractions.Abbas.Rd man/annotate_cell_type.Rd man/available_datasets.Rd man/cell_type_map.Rd man/cell_type_mapping.Rd man/cell_type_tree.Rd man/check_cancer_types.Rd man/deconvolute.Rd man/deconvolute_quantiseq.default.Rd man/deconvolute_timer.Rd man/deconvolution_methods.Rd man/eset_to_matrix.Rd man/example_gene_expression_matrix.Rd man/find_children.Rd man/immune_deconvolution_methods.Rd man/make_bulk_eset.Rd man/make_random_bulk.Rd man/map_cell_types.Rd man/map_result_to_celltypes.Rd man/quantiseq_helper.Rd man/scale_to_million.Rd man/set_cibersort_binary.Rd man/set_cibersort_mat.Rd man/single_cell_simulation.Rd man/summarise_children.Rd man/timer.Rd man/timer_available_cancers.Rd man/xCell.data.Rd tests/testthat.R
tests/testthat/bulk_mat.tsv
tests/testthat/test_deconvolution.R tests/testthat/test_mapping.R tests/testthat/test_simulation.R vignettes/immunedeconv.Rmd
vignettes/references.bib
grst/immunedeconv documentation built on Nov. 17, 2018, 2:20 p.m.