deconvolute_seqimmucc: Deconvolute using seqImmuCC

In grst/immunedeconv: Methods for immune cell deconvolution

Deconvolute using seqImmuCC

Description

Deconvolute using seqImmuCC

Usage

deconvolute_seqimmucc(
  gene_expression_matrix,
  algorithm = c("SVR", "LLSR"),
  ...
)

Arguments

gene_expression_matrix	a m x n matrix with m genes and n samples. Data should NOT be normalized (raw counts)
algorithm	the method to use for deconvolution. Possible choices are 'SVR' for CIBERSORT or 'LLSR' for least squares regression
...	passed through to original quantiseq method. A native argument takes precedence over an immunedeconv argument

grst/immunedeconv documentation built on Nov. 10, 2023, 1:33 a.m.