create_base_compendium: Souce code to create the compendium used kin the BASE...
In grst/immunedeconv: Methods for immune cell deconvolution
create_base_compendium R Documentation
Souce code to create the compendium used kin the BASE algorithm, containing
up- and down-regulated weight sets that specify the
This code is adapted from Varn et al., DOI: 10.1158/0008-5472.CAN-16-2490
Description
Souce code to create the compendium used kin the BASE algorithm, containing
up- and down-regulated weight sets that specify the
This code is adapted from Varn et al., DOI: 10.1158/0008-5472.CAN-16-2490
Usage
create_base_compendium(signature_matrix)
Arguments
signature_matrix
numeric matrix; The signature matrix from which the compendium will be built.
Must contain genes on rows and cell on columns
grst/immunedeconv documentation built on Nov. 10, 2023, 1:33 a.m.
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| create_base_compendium | R Documentation |
Souce code to create the compendium used kin the BASE algorithm, containing up- and down-regulated weight sets that specify the This code is adapted from Varn et al., DOI: 10.1158/0008-5472.CAN-16-2490
Description
Souce code to create the compendium used kin the BASE algorithm, containing up- and down-regulated weight sets that specify the This code is adapted from Varn et al., DOI: 10.1158/0008-5472.CAN-16-2490
Usage
create_base_compendium(signature_matrix)
Arguments
signature_matrix |
numeric matrix; The signature matrix from which the compendium will be built. Must contain genes on rows and cell on columns |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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