deconvolute_mmcp_counter: Deconvolute using mMCP-counter

In grst/immunedeconv: Methods for immune cell deconvolution

Deconvolute using mMCP-counter

Description

Deconvolute using mMCP-counter

Usage

deconvolute_mmcp_counter(
  gene_expression_matrix,
  log2 = TRUE,
  gene_id = "Gene.Symbol",
  genome = "GCRm39"
)

Arguments

gene_expression_matrix	a m x n matrix with m genes and n samples. Should be TPM normalized
log2	logical. If TRUE, log2 transforms the expression matrix
gene_id	specifies the format of the gene IDs. Possible choices are 'Gene.Symbol' (default), 'ENSEMBL.ID' or 'Probes' (Affymetrix array probes)
genome	specifies the mouse genome version to use, GCRm39 (default) or GCRm38

grst/immunedeconv documentation built on Nov. 10, 2023, 1:33 a.m.