alignment2Genome: Map alignment positions to genomic positions.
In gschofl/genoslideR: Create and manipulate multiple genome alignments with annotation.
Description
Usage
Arguments
Value
See Also
Description
Map alignment positions to genomic positions.
Usage
1
alignment2Genome(ranges, aln, targetGenomes = NULL)
Arguments
ranges
a GRanges or
GRangesList containing alignment
positions to map to the targetGenomes.
aln
an annotatedAlignment instance.
targetGenomes
a character vector of genome names.
Value
A GRangesList object.
See Also
genome2Alignment, genome2Genome,
sliceAlignment, findAnnotation.
gschofl/genoslideR documentation built on May 17, 2019, 8:52 a.m.
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Description Usage Arguments Value See Also
Description
Map alignment positions to genomic positions.
Usage
1 | alignment2Genome(ranges, aln, targetGenomes = NULL)
|
Arguments
ranges |
a |
aln |
an |
targetGenomes |
a character vector of genome names. |
Value
A GRangesList object.
See Also
genome2Alignment, genome2Genome,
sliceAlignment, findAnnotation.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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