Files in gschofl/genoslideR
Create and manipulate multiple genome alignments with annotation.
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/Eta.R
R/RcppExports.R
R/aggregate-alignment.R
R/align-segments.R
R/aln2map.R
R/annotatedAlignment.R
R/annotationList.R
R/blat-to-hits.R
R/genoslideR-utils.R
R/genoslideR.R
R/glimmer.R
R/import-alignment.R
R/import-annotation.R
R/map-alignments.R
R/map2aln.R
R/mask-genomes.R
R/mercator.R
R/merge-mercator-segments.R
R/orthology-utils.R
R/orthology.R
R/reciprocal-blat.R
R/slice-aln.R
R/utility-functions.R
R/utils.R
genoslideR.Rproj
inst/scripts/install_dependencies_ubuntu.sh
inst/scripts/maf2mfa.pl
man/SysCall.Rd
man/aggregateAlignment.Rd
man/alignSegments.Rd
man/alignment2Genome.Rd
man/aln2map.Rd
man/anchors.Rd
man/annotatedAlignment-class.Rd
man/annotatedAlignment.Rd
man/annotationList-class.Rd
man/file_size.Rd
man/findAnnotation.Rd
man/fsa.Rd
man/genome2Alignment.Rd
man/genome2Genome.Rd
man/genoslideR.Rd
man/glimmer3.Rd
man/has_command.Rd
man/importAlignment.Rd
man/importAnnotation.Rd
man/install_genoslider_dependencies.Rd
man/labels.Rd
man/linebreak.Rd
man/make_tree.Rd
man/map2aln.Rd
man/maskSequence.Rd
man/mercator.Rd
man/mergeOrthologyMatrix.Rd
man/minimum.Rd
man/ncbi_bacteria.Rd
man/orthologyMatrix.Rd
man/plot.OrthoMatrix.Rd
man/rbh.Rd
man/sliceAlignment.Rd
man/sliceGR.Rd
man/sliceGRL.Rd
man/strip_ext.Rd
man/substituteCDSNumbers.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/find_gaps.cpp
src/make_gapped_ranges.cpp
src/make_ungapped_ranges.cpp
src/update_genome_positions.cpp
