make_tree: [INTERNAL] conctruct NJ or BIONJ tree from one or more...
In gschofl/genoslideR: Create and manipulate multiple genome alignments with annotation.
Description
[INTERNAL] conctruct NJ or BIONJ tree from one or more multi-fasta files
Usage
1
make_tree(fna_dir, align = "muscle", dist.model = "K80", tree = "bionj")
Arguments
fasta_dir
Directory containing (a) multi-FASTA file(s).
align
One of 'clustal', 'muscle', or 'tcoffee'.
dist.model
See dist.dna
tree
One of 'nj', 'bionj', or 'fastme'.
gschofl/genoslideR documentation built on May 17, 2019, 8:52 a.m.
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Description
[INTERNAL] conctruct NJ or BIONJ tree from one or more multi-fasta files
Usage
1 | make_tree(fna_dir, align = "muscle", dist.model = "K80", tree = "bionj")
|
Arguments
fasta_dir |
Directory containing (a) multi-FASTA file(s). |
align |
One of 'clustal', 'muscle', or 'tcoffee'. |
dist.model |
See |
tree |
One of 'nj', 'bionj', or 'fastme'. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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