sliceAlignment: Slice genomic ranges from an alignment.
In gschofl/genoslideR: Create and manipulate multiple genome alignments with annotation.
Description
Usage
Arguments
Value
See Also
Description
The ranges passed to sliceAlignment are converted
from genomic ranges to alignment ranges. The alignment ranges
are returned as metadata with the resulting
DNAStringSetList object.
Usage
1
sliceAlignment(ranges, aln, targetGenomes = NULL)
Arguments
ranges
a GRanges or
GRangesList containing genomic positions.
aln
an annotatedAlignment instance.
targetGenomes
a character vector of genome names.
Value
A DNAStringSetList object.
See Also
alignment2Genome, genome2Alignment,
genome2Genome, findAnnotation.
gschofl/genoslideR documentation built on May 17, 2019, 8:52 a.m.
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Description Usage Arguments Value See Also
Description
The ranges passed to sliceAlignment are converted
from genomic ranges to alignment ranges. The alignment ranges
are returned as metadata with the resulting
DNAStringSetList object.
Usage
1 | sliceAlignment(ranges, aln, targetGenomes = NULL)
|
Arguments
ranges |
a |
aln |
an |
targetGenomes |
a character vector of genome names. |
Value
A DNAStringSetList object.
See Also
alignment2Genome, genome2Alignment,
genome2Genome, findAnnotation.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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