genome2Alignment: Map genomic positions to alignment positions.
In gschofl/genoslideR: Create and manipulate multiple genome alignments with annotation.
Description
Usage
Arguments
Value
See Also
View source: R/map-alignments.R
Description
Map genomic positions to alignment positions.
Usage
1
genome2Alignment(ranges, aln, simplify = FALSE)
Arguments
ranges
a GRanges or
GRangesList containing genomic
positions to map to the alignment.
aln
an annotatedAlignment instance.
simplify
if TRUE, return GRanges, otherwise
return a GRangesList.
Value
A GRangesList object.
object.
See Also
alignment2Genome, genome2Genome,
sliceAlignment, findAnnotation.
gschofl/genoslideR documentation built on May 17, 2019, 8:52 a.m.
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Description Usage Arguments Value See Also
View source: R/map-alignments.R
Description
Map genomic positions to alignment positions.
Usage
1 | genome2Alignment(ranges, aln, simplify = FALSE)
|
Arguments
ranges |
a |
aln |
an |
simplify |
if |
Value
A GRangesList object.
object.
See Also
alignment2Genome, genome2Genome,
sliceAlignment, findAnnotation.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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