importAnnotation: Import annotation information into 'GRanges'.
In gschofl/genoslideR: Create and manipulate multiple genome alignments with annotation.
Description
Usage
Arguments
Value
View source: R/import-annotation.R
Description
Import annotation information into GRanges.
Usage
1
importAnnotation(annopath, type = "gff", ...)
Arguments
annopath
Path to annotation files.
type
Type of annotation. Supported file types are gff,
ptt, ftb (NCBI feature table), genbank/gbk,
and table (custom tab-delimted annotation files, minimally containing
start and end values).
...
Optionally features (default: CDS, RNA), seqid
(sequence identifier, e.g. NCBI accession numbers), and sep.
Value
a GRangesList object.
gschofl/genoslideR documentation built on May 17, 2019, 8:52 a.m.
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Description Usage Arguments Value
View source: R/import-annotation.R
Description
Import annotation information into GRanges.
Usage
1 | importAnnotation(annopath, type = "gff", ...)
|
Arguments
annopath |
Path to annotation files. |
type |
Type of annotation. Supported file types are gff, ptt, ftb (NCBI feature table), genbank/gbk, and table (custom tab-delimted annotation files, minimally containing start and end values). |
... |
Optionally |
Value
a GRangesList object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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