Description Usage Arguments Details
Find Reciprocal Best Hits using Blat
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seq_files |
Path to sequence files ('fasta' or 'genbank'). |
anno_files |
(Optional) Path to annotation files. If no
annotation files are provided an ab initio annotation
using |
anno_type |
Type of annotation ('glimmer3', 'genbank', 'gff', 'ptt', or 'ftable'). |
blatopts |
Options passed to |
glimmeropts |
Options passed to |
wd |
Working directory. Defaults to the parent directory of the provided sequence files. |
rbh
will create a hidden directory ‘.rbh’
in the parent directory of the submitted sequence files and place
all results of the intermediate computational steps in this directory.
The results of a rbh
run are stored in a directory
‘rbh’ in the parent directory of the submitted sequence files.
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