alignSegments: Align orthologous genome segments with 'fsa'
In gschofl/genoslideR: Create and manipulate multiple genome alignments with annotation.
Description
Usage
Arguments
See Also
Description
Align orthologous genome segments with fsa
Usage
1
2
3
alignSegments(seg_dir, fsa.opts = list(anchored = TRUE, translated = TRUE,
exonerate = TRUE, softmasked = TRUE), ..., skip.completed = TRUE,
ncores = detectCores() - 1)
Arguments
seg_dir
Path to mercator segments.
fsa.opts
a named list of options for fsa. The default
options are optimisiing fsa for long sequence alignment.
...
Named values interpreted as options for fsa.
skip.completed
if TRUE, don't realign an existing alignment.
ncores
Number of cores to utilised for parallelisation
See Also
gschofl/genoslideR documentation built on May 17, 2019, 8:52 a.m.
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Description Usage Arguments See Also
Description
Align orthologous genome segments with fsa
Usage
1 2 3 | alignSegments(seg_dir, fsa.opts = list(anchored = TRUE, translated = TRUE,
exonerate = TRUE, softmasked = TRUE), ..., skip.completed = TRUE,
ncores = detectCores() - 1)
|
Arguments
seg_dir |
Path to mercator segments. |
fsa.opts |
a named list of options for |
... |
Named values interpreted as options for fsa. |
skip.completed |
if |
ncores |
Number of cores to utilised for parallelisation |
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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