ncbi_bacteria: Retrieve bacterial genomes from NCBI FTP site
In gschofl/genoslideR: Create and manipulate multiple genome alignments with annotation.
View source: R/utility-functions.R
Description
Get genomes from ftp://ftp.ncbi.nih.gov/genomes/Bacteria/
Usage
1
2
ncbi_bacteria(which, what = "gbk|gff|fna", where = "~/Bacteria",
ignore.case = TRUE)
Arguments
which
A regular expression to match the directories
of completed bacterial genomes.
what
A regular expression to match file extensions. Possible
values are gbk (Genbank), gff (GFF3 file), fna
(FASTA), ptt (protein table).
where
Local target directory for downloading
ignore.case
Case sensitive pattern matching if FALSE
gschofl/genoslideR documentation built on May 17, 2019, 8:52 a.m.
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View source: R/utility-functions.R
Description
Get genomes from ftp://ftp.ncbi.nih.gov/genomes/Bacteria/
Usage
1 2 | ncbi_bacteria(which, what = "gbk|gff|fna", where = "~/Bacteria",
ignore.case = TRUE)
|
Arguments
which |
A regular expression to match the directories of completed bacterial genomes. |
what |
A regular expression to match file extensions. Possible values are gbk (Genbank), gff (GFF3 file), fna (FASTA), ptt (protein table). |
where |
Local target directory for downloading |
ignore.case |
Case sensitive pattern matching if |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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