View source: R/utility-functions.R
Get genomes from ftp://ftp.ncbi.nih.gov/genomes/Bacteria/
1 2 | ncbi_bacteria(which, what = "gbk|gff|fna", where = "~/Bacteria",
ignore.case = TRUE)
|
which |
A regular expression to match the directories of completed bacterial genomes. |
what |
A regular expression to match file extensions. Possible values are gbk (Genbank), gff (GFF3 file), fna (FASTA), ptt (protein table). |
where |
Local target directory for downloading |
ignore.case |
Case sensitive pattern matching if |
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