API for gschofl/genoslideR
Create and manipulate multiple genome alignments with annotation.
| Global functions | |
|---|---|
| .aln2map | Source code |
| .show_AnnotationList | Source code |
| .sw | Source code |
| Call | Source code |
| Partial | Source code |
| SysCall | Man page |
| aggregateAlignment | Man page Source code |
| aggregateRanges | Source code |
| alignSegmentDir | Source code |
| alignSegments | Man page |
| alignment2Genome | Man page |
| aln2map | Man page |
| anchors | Man page |
| annotatedAlignment | Man page |
| annotatedAlignment-class | Man page |
| annotationList | Source code |
| annotationList-class | Man page |
| are_empty | Source code |
| blat_add_query_length | Source code |
| build_icm | Source code |
| capitalize | Source code |
| compact | Source code |
| compactNA | Source code |
| count_lines | Source code |
| create_if_not_exists | Source code |
| ellipsize | Source code |
| extract | Source code |
| file_size | Man page Source code |
| findAnnotation | Man page |
| find_breakpoints | Source code |
| find_gaps | Source code |
| fsa | Man page |
| fsaAlignSegmentDirs | Source code |
| gbk2gff | Source code |
| genome2Alignment | Man page Source code |
| genome2Genome | Man page |
| genoslideR | Man page |
| genoslideR-package | Man page |
| get_alignment_gaps | Source code |
| get_position_from_gff | Source code |
| gff2anchors | Source code |
| glimmer3 | Man page Source code |
| guide_tree | Source code |
| has_command | Man page |
| has_dependencies | Source code |
| importAlignment | Man page |
| importAnnotation | Man page Source code |
| import_annotation_from_ftb | Source code |
| import_annotation_from_genbank | Source code |
| import_annotation_from_gff | Source code |
| import_annotation_from_ptt | Source code |
| import_annotation_from_table | Source code |
| install_genoslider_dependencies | Man page Source code |
| interval | Source code |
| intervals_overlap | Source code |
| is.empty | Source code |
| is_fasta | Source code |
| is_gbk | Source code |
| labeledLine | Source code |
| labels | Man page |
| labels<- | Man page |
| linebreak | Man page Source code |
| make_gapped_ranges | Source code |
| make_tree | Man page |
| make_ungapped_ranges | Source code |
| map2aln | Man page |
| map2range | Source code |
| map_max | Source code |
| map_min | Source code |
| maskSequence | Man page Source code |
| match_genes | Source code |
| maximum | Source code |
| mercator | Man page Source code |
| mergeOrthologyMatrix | Man page |
| merge_hsps | Source code |
| merge_list | Source code |
| merge_segments | Source code |
| minimum | Man page Source code |
| ncbi_bacteria | Man page Source code |
| orthologyMatrix | Man page Source code |
| plot.OrthoMatrix | Man page |
| rbh | Man page Source code |
| reciprocal_blat | Source code |
| replace_ext | Source code |
| run_glimmer | Source code |
| sliceAlignment | Man page |
| sliceGR | Man page Source code |
| sliceGRL | Man page |
| slidingWindows | Source code |
| strip_ext | Man page Source code |
| subl | Source code |
| substituteCDSNumbers | Man page Source code |
| trim | Source code |
| update_alignment_position_cpp | Source code |
| update_genomic_position_cpp | Source code |
