R/RcppExports.R

In gschofl/genoslideR: Create and manipulate multiple genome alignments with annotation.

# This file was generated by Rcpp::compileAttributes
# Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393

find_gaps <- function(seq) {
    .Call('genoslideR_find_gaps', PACKAGE = 'genoslideR', seq)
}

make_gapped_ranges <- function(start, end, gaprange) {
    .Call('genoslideR_make_gapped_ranges', PACKAGE = 'genoslideR', start, end, gaprange)
}

make_ungapped_ranges <- function(start, end, nm, gaprange) {
    .Call('genoslideR_make_ungapped_ranges', PACKAGE = 'genoslideR', start, end, nm, gaprange)
}

update_genomic_position_cpp <- function(cut_ranges, genomic_hit_ranges, alignment_hit_ranges, strand) {
    invisible(.Call('genoslideR_update_genomic_position_cpp', PACKAGE = 'genoslideR', cut_ranges, genomic_hit_ranges, alignment_hit_ranges, strand))
}

update_alignment_position_cpp <- function(cut_ranges, genomic_hit_ranges, alignment_hit_ranges, strand) {
    invisible(.Call('genoslideR_update_alignment_position_cpp', PACKAGE = 'genoslideR', cut_ranges, genomic_hit_ranges, alignment_hit_ranges, strand))
}